second-brain/src/second_brain/models.py
Travis Herbranson d055d1798d transcripts: capture segment-level output into a new JSONB column
Tower worker now persists faster-whisper's segment-level output
(start/end/text + word-level timing when available) alongside the
existing joined `transcript_text`. The text column stays the canonical
input the extractor reads — this is additive.

Changes:

- alembic v4: sources.transcript_segments JSONB NULL. JSONB rather than
  JSON so future equality/containment queries are indexable without a
  re-migration. Same lovebug-no-CREATE-on-petalbrain guard as prior
  migrations.

- ORM model: Optional[list] mapped to JSONB (postgresql dialect).

- transcribe.py:
  - Always pass word_timestamps=True to faster-whisper.transcribe.
  - New segment_to_dict() flattens the upstream NamedTuple-shaped
    Segment/Word into JSON-safe plain dicts so the JSONB write doesn't
    drag faster-whisper into any reader.
  - Per-word defensive conversion: a single malformed word can't drop
    the surrounding segment.

- transcribe_worker._advance: after a successful transcribe, persist
  segments into source.transcript_segments inside a try/except. If the
  JSONB write fails (oversize row, malformed dict, etc.) we log a
  warning and still commit transcript_text + status=TRANSCRIBED — the
  pipeline never crashes over the additive index.

- Tests: three new unit tests against fake Segment/Word objects cover
  the happy path (word entries serialise), the no-words case
  (`segment.words is None` → empty list), and the malformed-word skip.
  json.dumps(d) asserts JSONB-binding compatibility.

Live-verified: migration applied clean against petalbrain (`\d sources`
shows transcript_segments jsonb); ORM round-trip writes and reads the
sample payload identically. GPU large-v3 word-timestamp behaviour is
unchanged from upstream — only the tower can validate that hot path.
2026-05-25 13:40:49 -04:00

277 lines
9.3 KiB
Python

"""
SQLAlchemy ORM models for second-brain.
All tables live in the Postgres `second_brain` schema (in the petalbrain DB).
PK style is int autoincrement (SERIAL in Postgres); timestamps are naive UTC
(`timestamp without time zone`) per the locked design decisions in CLAUDE.md.
Tables:
- Source — a queued/processed URL (video or article)
- Extraction — structured LLM output for a source
- WikiPage — track which vault pages have been written / updated
"""
from __future__ import annotations
import enum
from datetime import datetime, time, timezone
from typing import Optional
from sqlalchemy import (
JSON,
Boolean,
DateTime,
Enum,
ForeignKey,
Integer,
MetaData,
String,
Text,
Time,
)
from sqlalchemy.dialects.postgresql import JSONB
from sqlalchemy.orm import DeclarativeBase, Mapped, mapped_column, relationship
def utcnow() -> datetime:
"""Naive UTC timestamp. Replaces `datetime.utcnow()` (deprecated in 3.12)."""
return datetime.now(timezone.utc).replace(tzinfo=None)
SCHEMA = "second_brain"
class Base(DeclarativeBase):
"""Shared declarative base. All tables live in the `second_brain` schema."""
metadata = MetaData(schema=SCHEMA)
# ---------------------------------------------------------------------------
# Enums
# ---------------------------------------------------------------------------
class SourceType(enum.Enum):
VIDEO = "video"
ARTICLE = "article"
class SourceStatus(enum.Enum):
PENDING = "pending"
PULLED = "pulled"
TRANSCRIBED = "transcribed"
ANALYZED = "analyzed"
ACCEPTED = "accepted"
PUBLISHED = "published"
FAILED = "failed"
# Native Postgres enum types, scoped to the second_brain schema so they
# don't collide with anything else in the cluster.
_SourceTypeEnum = Enum(
SourceType,
name="source_type",
schema=SCHEMA,
values_callable=lambda et: [e.value for e in et],
)
_SourceStatusEnum = Enum(
SourceStatus,
name="source_status",
schema=SCHEMA,
values_callable=lambda et: [e.value for e in et],
)
# ---------------------------------------------------------------------------
# Models
# ---------------------------------------------------------------------------
class Source(Base):
"""A URL queued for processing."""
__tablename__ = "sources"
id: Mapped[int] = mapped_column(Integer, primary_key=True, autoincrement=True)
url: Mapped[str] = mapped_column(String(2000), unique=True, nullable=False)
title: Mapped[Optional[str]] = mapped_column(String(500), nullable=True)
source_type: Mapped[SourceType] = mapped_column(
_SourceTypeEnum, nullable=False, default=SourceType.VIDEO
)
# Domain and focus
domain: Mapped[str] = mapped_column(String(50), nullable=False, default="development")
focus: Mapped[Optional[str]] = mapped_column(Text, nullable=True)
# Pipeline status
status: Mapped[SourceStatus] = mapped_column(
_SourceStatusEnum, nullable=False, default=SourceStatus.PENDING
)
# File paths (set after pull/transcribe steps)
media_path: Mapped[Optional[str]] = mapped_column(String(1000), nullable=True)
transcript_path: Mapped[Optional[str]] = mapped_column(String(1000), nullable=True)
transcript_text: Mapped[Optional[str]] = mapped_column(Text, nullable=True)
# Segment-level output from faster-whisper. List of dicts
# `{id, start, end, text, words: [{start, end, word, probability}, …]}`.
# transcript_text remains the canonical full text the extractor reads;
# this is an additive index for future timestamp-anchored use cases.
transcript_segments: Mapped[Optional[list]] = mapped_column(JSONB, nullable=True)
# Metadata from the source
published_at: Mapped[Optional[datetime]] = mapped_column(DateTime, nullable=True)
duration_seconds: Mapped[Optional[int]] = mapped_column(Integer, nullable=True)
author: Mapped[Optional[str]] = mapped_column(String(200), nullable=True)
# Timestamps
ingested_at: Mapped[datetime] = mapped_column(DateTime, default=utcnow)
updated_at: Mapped[Optional[datetime]] = mapped_column(DateTime, nullable=True)
error_message: Mapped[Optional[str]] = mapped_column(Text, nullable=True)
# Claim mechanism — see `second_brain.claim` for the queue dance.
claimed_by: Mapped[Optional[str]] = mapped_column(String(100), nullable=True)
claimed_at: Mapped[Optional[datetime]] = mapped_column(DateTime, nullable=True)
# Relationships
extraction: Mapped[Optional["Extraction"]] = relationship(
"Extraction", back_populates="source", uselist=False, cascade="all, delete-orphan"
)
def __repr__(self) -> str:
return (
f"Source(id={self.id}, domain={self.domain!r}, "
f"status={self.status.value}, url={self.url!r})"
)
class Extraction(Base):
"""Structured LLM extraction output for a source."""
__tablename__ = "extractions"
id: Mapped[int] = mapped_column(Integer, primary_key=True, autoincrement=True)
source_id: Mapped[int] = mapped_column(
ForeignKey(f"{SCHEMA}.sources.id", ondelete="CASCADE"),
nullable=False,
unique=True,
)
# Core fields (mirrors the extraction schema contract)
summary: Mapped[Optional[str]] = mapped_column(Text, nullable=True)
key_points: Mapped[Optional[list]] = mapped_column(JSON, nullable=True)
entities: Mapped[Optional[list]] = mapped_column(JSON, nullable=True)
claims: Mapped[Optional[list]] = mapped_column(JSON, nullable=True)
open_questions: Mapped[Optional[list]] = mapped_column(JSON, nullable=True)
contradictions: Mapped[Optional[list]] = mapped_column(JSON, nullable=True)
# Raw LLM response (for debugging / re-parsing)
raw_response: Mapped[Optional[str]] = mapped_column(Text, nullable=True)
# Token usage
input_tokens: Mapped[Optional[int]] = mapped_column(Integer, nullable=True)
output_tokens: Mapped[Optional[int]] = mapped_column(Integer, nullable=True)
created_at: Mapped[datetime] = mapped_column(DateTime, default=utcnow)
# Relationships
source: Mapped["Source"] = relationship("Source", back_populates="extraction")
def __repr__(self) -> str:
return f"Extraction(id={self.id}, source_id={self.source_id})"
class WikiPage(Base):
"""Tracks vault pages written or updated by the wiki compiler."""
__tablename__ = "wiki_pages"
id: Mapped[int] = mapped_column(Integer, primary_key=True, autoincrement=True)
# Relative path inside the vault
vault_path: Mapped[str] = mapped_column(String(500), unique=True, nullable=False)
domain: Mapped[str] = mapped_column(String(50), nullable=False)
title: Mapped[str] = mapped_column(String(300), nullable=False)
# Git commit shas before/after last compile
git_sha_before: Mapped[Optional[str]] = mapped_column(String(40), nullable=True)
git_sha_after: Mapped[Optional[str]] = mapped_column(String(40), nullable=True)
created_at: Mapped[datetime] = mapped_column(DateTime, default=utcnow)
updated_at: Mapped[Optional[datetime]] = mapped_column(DateTime, nullable=True)
def __repr__(self) -> str:
return f"WikiPage(id={self.id}, vault_path={self.vault_path!r})"
class PipelineSettings(Base):
"""Single-row config the web dashboard edits and workers read.
The transcription_* fields persist now and will be honored by the
tower-side transcribe worker once it exists; the extraction_* fields
are already wired into the dev-side scheduler. The row is pinned to
`id=1` by a DB-level CHECK so upserts-by-PK keep the table singleton.
"""
__tablename__ = "pipeline_settings"
id: Mapped[int] = mapped_column(Integer, primary_key=True, default=1)
# Transcription (consumed by the tower-side worker — not yet built).
transcription_enabled: Mapped[bool] = mapped_column(
Boolean, nullable=False, default=True
)
transcription_active_hours_start: Mapped[Optional[time]] = mapped_column(
Time, nullable=True
)
transcription_active_hours_end: Mapped[Optional[time]] = mapped_column(
Time, nullable=True
)
transcription_max_concurrent_gpu_jobs: Mapped[int] = mapped_column(
Integer, nullable=False, default=1
)
transcription_max_video_length_seconds: Mapped[Optional[int]] = mapped_column(
Integer, nullable=True
)
transcription_max_items_per_run: Mapped[int] = mapped_column(
Integer, nullable=False, default=10
)
# Extraction (consumed by the dev-side scheduler today).
extraction_enabled: Mapped[bool] = mapped_column(
Boolean, nullable=False, default=True
)
extraction_active_hours_start: Mapped[Optional[time]] = mapped_column(
Time, nullable=True
)
extraction_active_hours_end: Mapped[Optional[time]] = mapped_column(
Time, nullable=True
)
extraction_max_items_per_run: Mapped[int] = mapped_column(
Integer, nullable=False, default=20
)
updated_at: Mapped[datetime] = mapped_column(
DateTime, default=utcnow, onupdate=utcnow
)
def __repr__(self) -> str:
return (
f"PipelineSettings(transcription_enabled={self.transcription_enabled}, "
f"extraction_enabled={self.extraction_enabled})"
)
__all__ = [
"Base",
"SCHEMA",
"Source",
"SourceStatus",
"SourceType",
"Extraction",
"PipelineSettings",
"WikiPage",
"utcnow",
]